If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 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'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 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'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 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'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ), 'gf_id' => 'HOM05D000626', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000626' ), 'data_identifier' => 'HOM05D000626', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000626', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00030' => 'bna', 'A01p02090' => 'bna', 'A01p39230' => 'bna', 'A02p44450' => 'bna', 'A03p41600' => 'bna', 'A03p64630' => 'bna', 'A04p18210' => 'bna', 'A05p28810' => 'bna', 'A05p28910' => 'bna', 'A05p34880' => 'bna', 'A07p01980' => 'bna', 'A07p02070' => 'bna', 'A07p17280' => 'bna', 'A08p22430' => 'bna', 'A09p09850' => 'bna', 'A09p12020' => 'bna', 'A09p56730' => 'bna', 'Aa31LG1G15220' => 'aar', 'Aa31LG6G13620' => 'aar', 'Aa31LG7G13080' => 'aar', 'Aa31LG8G1770' => 'aar', 'Aa31LG8G6940' => 'aar', 'Aa31LG8G6950' => 'aar', 'Aa31LG8G6990' => 'aar', 'Aa31sc257G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2383' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4321' => 'aag', 'Actinidia00502' => 'ach', 'Actinidia18028' => 'ach', 'Actinidia20540' => 'ach', 'Actinidia25417' => 'ach', 'Actinidia25418' => 'ach', 'Actinidia35350' => 'ach', 'Actinidia36541' => 'ach', 'Ah.01g019620' => 'amhyb', 'Ah.01g023380' => 'amhyb', 'Ah.02g126450' => 'amhyb', 'Ah.03g139650' => 'amhyb', 'Ah.03g139660' => 'amhyb', 'Ah.06g185960' => 'amhyb', 'AL1G56880' => 'aly', 'AL3G26880' => 'aly', 'AL3G33860' => 'aly', 'AL3G51970' => 'aly', 'AL3G52000' => 'aly', 'AL3G52010' => 'aly', 'AL4G13820' => 'aly', 'AL7G10320' => 'aly', 'AL7G14190' => 'aly', 'AL7G46450' => 'aly', 'AL8G44800' => 'aly', 'Aqoxy1G01692' => 'aox', 'Aqoxy1G02118' => 'aox', 'Aqoxy1G02119' => 'aox', 'Aqoxy2G04027' => 'aox', 'Aqoxy3G00057' => 'aox', 'Aqoxy5G01696' => 'aox', 'Aqoxy5G01697' => 'aox', 'Aqoxy5G01699' => 'aox', 'Aqoxy5G01702' => 'aox', 'Aqoxy5G02139' => 'aox', 'Aqoxy6G01025' => 'aox', 'Aqoxy6G02782' => 'aox', 'arahy.Tifrunner.gnm1.ann1.41S86B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z2V5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61JD7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9EQ5HC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWJJ40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DA3C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FT0TL2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GNS53T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M1PYQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7PFA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMC2AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIS5WG' => 'arhy', 'AT1G49530' => 'ath', 'AT2G18620' => 'ath', 'AT2G18640' => 'ath', 'AT2G23800' => 'ath', 'AT3G14510' => 'ath', 'AT3G14530' => 'ath', 'AT3G14550' => 'ath', 'AT3G20160' => 'ath', 'AT3G29430' => 'ath', 'AT3G32040' => 'ath', 'AT4G36810' => 'ath', 'AT4G38460' => 'ath', 'AT5G66680' => 'ath', 'ATR0374G001' => 'atr', 'ATR0661G103' => 'atr', 'ATR0693G425' => 'atr', 'ATR0733G160' => 'atr', 'ATR0733G213' => 'atr', 'Atru.chr1.1873' => 'acertr', 'Atru.chr1.1877' => 'acertr', 'Atru.chr1.1878' => 'acertr', 'Atru.chr1.1891' => 'acertr', 'Atru.chr11.989' => 'acertr', 'Atru.chr2.3447' => 'acertr', 'Atru.chr3.3146' => 'acertr', 'Atru.chr3.3472' => 'acertr', 'Atru.chr3.512' => 'acertr', 'Atru.chr3.513' => 'acertr', 'Atru.chr5.2949' => 'acertr', 'Atru.chr5.3467' => 'acertr', 'AUR62003198' => 'cqu', 'AUR62003199' => 'cqu', 'AUR62003200' => 'cqu', 'AUR62008015' => 'cqu', 'AUR62008016' => 'cqu', 'AUR62008017' => 'cqu', 'AUR62009997' => 'cqu', 'AUR62011357' => 'cqu', 'AUR62012985' => 'cqu', 'AUR62016705' => 'cqu', 'BcaB02g10001' => 'bca', 'BcaB03g12369' => 'bca', 'BcaB03g16651' => 'bca', 'BcaB04g19086' => 'bca', 'BcaB04g19087' => 'bca', 'BcaB04g19091' => 'bca', 'BcaB04g19093' => 'bca', 'BcaB04g20111' => 'bca', 'BcaB04g20665' => 'bca', 'BcaB06g25376' => 'bca', 'BcaB06g26088' => 'bca', 'BcaB06g27939' => 'bca', 'BcaB07g29659' => 'bca', 'BcaB07g31652' => 'bca', 'BcaC01g00438' => 'bca', 'BcaC01g03581' => 'bca', 'BcaC01g03582' => 'bca', 'BcaC01g03926' => 'bca', 'BcaC02g08529' => 'bca', 'BcaC03g18407' => 'bca', 'BcaC04g22893' => 'bca', 'BcaC04g23148' => 'bca', 'BcaC05g28347' => 'bca', 'BcaC05g29062' => 'bca', 'BcaC06g34731' => 'bca', 'BcaC06g36439' => 'bca', 'BcaC06g36441' => 'bca', 'BcaC07g40973' => 'bca', 'BcaC09g48964' => 'bca', 'BcaNung01306' => 'bca', 'BcaNung03528' => 'bca', 'BcaNung03529' => 'bca', 'BcaNung04223' => 'bca', 'BolC1t00219H' => 'bol', 'BolC1t04362H' => 'bol', 'BolC1t04363H' => 'bol', 'BolC3t16971H' => 'bol', 'BolC3t17380H' => 'bol', 'BolC3t20233H' => 'bol', 'BolC4t26892H' => 'bol', 'BolC5t33144H' => 'bol', 'BolC5t33952H' => 'bol', 'BolC7t40806H' => 'bol', 'BolC7t40808H' => 'bol', 'BolC7t43044H' => 'bol', 'BolC8t51541H' => 'bol', 'BolC9t54060H' => 'bol', 'BolC9t54312H' => 'bol', 'BraA01t00008Z' => 'bra', 'BraA01t00198Z' => 'bra', 'BraA01t03966Z' => 'bra', 'BraA02t09362Z' => 'bra', 'BraA03t13035Z' => 'bra', 'BraA03t13313Z' => 'bra', 'BraA03t15527Z' => 'bra', 'BraA04t17434Z' => 'bra', 'BraA05t21758Z' => 'bra', 'BraA05t21767Z' => 'bra', 'BraA05t22300Z' => 'bra', 'BraA07t27997Z' => 'bra', 'BraA07t28002Z' => 'bra', 'BraA07t29454Z' => 'bra', 'BraA08t34199Z' => 'bra', 'BraA09t36632Z' => 'bra', 'BraA09t36845Z' => 'bra', 'BraA09t41064Z' => 'bra', 'C01p00070' => 'bna', 'C01p02270' => 'bna', 'C01p43980' => 'bna', 'C01p43990' => 'bna', 'C02p64860' => 'bna', 'C03p47060' => 'bna', 'C03p50940' => 'bna', 'C03p79830' => 'bna', 'C04p53380' => 'bna', 'C05p44220' => 'bna', 'C05p52730' => 'bna', 'C07p04120' => 'bna', 'C07p25140' => 'bna', 'C08p39710' => 'bna', 'C09p11660' => 'bna', 'C09p14150' => 'bna', 'CAN.G1126.19' => 'can', 'CAN.G204.14' => 'can', 'CAN.G222.6' => 'can', 'CAN.G322.113' => 'can', 'CAN.G337.140' => 'can', 'CAN.G358.132' => 'can', 'CAN.G358.133' => 'can', 'CAN.G358.134' => 'can', 'CAN.G371.131' => 'can', 'CAN.G490.23' => 'can', 'CAN.G824.39' => 'can', 'CANSAT01G0778' => 'cansat', 'CANSAT01G0918' => 'cansat', 'CANSAT11G2352' => 'cansat', 'CANSAT25G0621' => 'cansat', 'CANSAT78G2082' => 'cansat', 'CARHR089250' => 'chi', 'CARHR095720' => 'chi', 'CARHR095730' => 'chi', 'CARHR095740' => 'chi', 'CARHR109210' => 'chi', 'CARHR109230' => 'chi', 'CARHR184830' => 'chi', 'CARHR245170' => 'chi', 'CARHR281040' => 'chi', 'CARHR284770' => 'chi', 'CARHR284780' => 'chi', 'CARHR294180' => 'chi', 'Carub.0003s1422' => 'cru', 'Carub.0003s1424' => 'cru', 'Carub.0003s2008' => 'cru', 'Carub.0003s2009' => 'cru', 'Carub.0003s3290' => 'cru', 'Carub.0004s0298' => 'cru', 'Carub.0007s0034' => 'cru', 'Carub.0007s0351' => 'cru', 'Carub.0008s2782' => 'cru', 'Ca_06325_v3' => 'car', 'Ca_11577_v3' => 'car', 'Ca_20850_v3' => 'car', 'Ca_24832_v3' => 'car', 'Ca_26383_v3' => 'car', 'CBR_g28880' => 'cbr', 'CBR_g38910' => 'cbr', 'Cc00_g32770' => 'ccan', 'Cc02_g17860' => 'ccan', 'Cc05_g13880' => 'ccan', 'Cc07_g09060' => 'ccan', 'Cc07_g09070' => 'ccan', 'Cc07_g13570' => 'ccan', 'Cc08_g05490' => 'ccan', 'Cc10_g03310' => 'ccan', 'CDE01G0350' => 'cde', 'CDE01G0575' => 'cde', 'CDE02G0349' => 'cde', 'CDE02G0645' => 'cde', 'CDE02G2161' => 'cde', 'CDE02G2965' => 'cde', 'CDE04G1091' => 'cde', 'Cfa004266' => 'cfa', 'Cfa007822' => 'cfa', 'Cfa020333' => 'cfa', 'Cfa021458' => 'cfa', 'Ciclev10002201m.g' => 'ccl', 'Ciclev10002259m.g' => 'ccl', 'Ciclev10003969m.g' => 'ccl', 'Ciclev10008936m.g' => 'ccl', 'Ciclev10012011m.g' => 'ccl', 'Ciclev10012067m.g' => 'ccl', 'Ciclev10012280m.g' => 'ccl', 'Ciclev10013734m.g' => 'ccl', 'Ciclev10013774m.g' => 'ccl', 'Ciclev10013791m.g' => 'ccl', 'Ciclev10024238m.g' => 'ccl', 'Ciclev10025935m.g' => 'ccl', 'Ciclev10028484m.g' => 'ccl', 'Ciclev10030419m.g' => 'ccl', 'CiPaw.01G032900' => 'cil', 'CiPaw.03G071100' => 'cil', 'CiPaw.03G115000' => 'cil', 'CiPaw.05G061300' => 'cil', 'CiPaw.05G086600' => 'cil', 'CiPaw.06G119100' => 'cil', 'CiPaw.11G190600' => 'cil', 'CiPaw.13G104500' => 'cil', 'CiPaw.16G057500' => 'cil', 'ClCG01G016200' => 'cla', 'ClCG02G003810' => 'cla', 'ClCG02G013430' => 'cla', 'ClCG09G010850' => 'cla', 'ClCG09G017810' => 'cla', 'COL.COLO4_03704' => 'col', 'COL.COLO4_09040' => 'col', 'COL.COLO4_15753' => 'col', 'COL.COLO4_18010' => 'col', 'COL.COLO4_22139' => 'col', 'COL.COLO4_22140' => 'col', 'COL.COLO4_32455' => 'col', 'Cpa.g.sc116.45' => 'cpa', 'Cpa.g.sc12.296' => 'cpa', 'Cpa.g.sc158.17' => 'cpa', 'Cpa.g.sc158.18' => 'cpa', 'Cpa.g.sc20.129' => 'cpa', 'Cpa.g.sc43.144' => 'cpa', 'Cpa.g.sc62.112' => 'cpa', 'Cre12.g484200' => 'cre', 'Cre14.g614100' => 'cre', 'CsaV3_2G014400' => 'csa', 'CsaV3_2G017600' => 'csa', 'CsaV3_6G042470' => 'csa', 'CsaV3_7G001340' => 'csa', 'CsaV3_7G021880' => 'csa', 'CSS0002315' => 'camsi', 'CSS0006874' => 'camsi', 'CSS0007938' => 'camsi', 'CSS0008786' => 'camsi', 'CSS0012103' => 'camsi', 'CSS0012597' => 'camsi', 'CSS0013243' => 'camsi', 'CSS0014885' => 'camsi', 'CSS0015330' => 'camsi', 'CSS0025494' => 'camsi', 'CSS0032883' => 'camsi', 'CSS0037823' => 'camsi', 'DCAR_003739' => 'dca', 'DCAR_012751' => 'dca', 'DCAR_016697' => 'dca', 'DCAR_016710' => 'dca', 'DCAR_017220' => 'dca', 'DCAR_017221' => 'dca', 'DCAR_022830' => 'dca', 'DCAR_027312' => 'dca', 'DCAR_028137' => 'dca', 'Dinv14140' => 'din', 'Dinv18657' => 'din', 'Dinv23553' => 'din', 'Dinv26799' => 'din', 'Dinv26800' => 'din', 'Dinv28213' => 'din', 'Dinv28214' => 'din', 'Dinv39385' => 'din', 'Dinv39947' => 'din', 'Dinv41905' => 'din', 'Duzib052G0942' => 'dzi', 'Duzib132G0298' => 'dzi', 'Duzib132G0893' => 'dzi', 'Duzib133G0187' => 'dzi', 'Duzib147G0490' => 'dzi', 'Duzib147G0879' => 'dzi', 'Duzib170G0408' => 'dzi', 'Duzib248G0246' => 'dzi', 'Duzib251G0751' => 'dzi', 'Duzib264G0072' => 'dzi', 'Duzib264G0658' => 'dzi', 'Duzib268G1544' => 'dzi', 'ECA232G3839' => 'eca', 'ECA234G3386' => 'eca', 'ECA240G1841' => 'eca', 'ECA246G0237' => 'eca', 'ECA246G1230' => 'eca', 'ECA246G5175' => 'eca', 'EL10Ac6g14893' => 'bvu', 'EL10Ac6g14894' => 'bvu', 'EL10Ac9g21321' => 'bvu', 'EL10Ac9g21756' => 'bvu', 'Eucgr.F00752' => 'egr', 'Eucgr.F02847' => 'egr', 'Eucgr.G01806' => 'egr', 'Eucgr.G01893' => 'egr', 'Eucgr.H01235' => 'egr', 'Eucgr.H01236' => 'egr', 'FAN01G2722' => 'fan', 'FAN04G0450' => 'fan', 'FAN06G0989' => 'fan', 'FAN09G2415' => 'fan', 'FAN11G3451' => 'fan', 'FAN12G3065' => 'fan', 'FAN15G2364' => 'fan', 'FAN15G3330' => 'fan', 'FAN19G1650' => 'fan', 'FAN20G2192' => 'fan', 'FAN20G2380' => 'fan', 'FAN23G1926' => 'fan', 'FAN24G1839' => 'fan', 'FAN26G0047' => 'fan', 'FAN27G0454' => 'fan', 'FAN27G2843' => 'fan', 'FAN28G0252' => 'fan', 'FvH4_1g14070' => 'fve', 'FvH4_2g08200' => 'fve', 'FvH4_2g15810' => 'fve', 'FvH4_2g22980' => 'fve', 'FvH4_3g22050' => 'fve', 'FvH4_4g13600' => 'fve', 'FvH4_4g14810' => 'fve', 'FvH4_4g33541' => 'fve', 'FvH4_6g12900' => 'fve', 'Glyma.02G059000' => 'gma', 'Glyma.02G291750' => 'gma', 'Glyma.08G093400' => 'gma', 'Glyma.11G063900' => 'gma', 'Glyma.11G120300' => 'gma', 'Glyma.12G045400' => 'gma', 'Glyma.13G326600' => 'gma', 'Glyma.14G023000' => 'gma', 'Glyma.16G141700' => 'gma', 'Glyma.19G144800' => 'gma', 'Gohir.A01G080500' => 'ghi', 'Gohir.A01G171400' => 'ghi', 'Gohir.A01G217600' => 'ghi', 'Gohir.A04G014500' => 'ghi', 'Gohir.A04G117400' => 'ghi', 'Gohir.A07G207250' => 'ghi', 'Gohir.A10G094300' => 'ghi', 'Gohir.A11G044300' => 'ghi', 'Gohir.A11G186800' => 'ghi', 'Gohir.A13G048600' => 'ghi', 'Gohir.D01G067700' => 'ghi', 'Gohir.D01G162400' => 'ghi', 'Gohir.D01G206500' => 'ghi', 'Gohir.D02G049600' => 'ghi', 'Gohir.D02G106300' => 'ghi', 'Gohir.D04G159100' => 'ghi', 'Gohir.D05G371900' => 'ghi', 'Gohir.D10G093500' => 'ghi', 'Gohir.D10G093600' => 'ghi', 'Gohir.D10G093700' => 'ghi', 'Gohir.D10G093800' => 'ghi', 'Gohir.D10G093900' => 'ghi', 'Gohir.D10G121100' => 'ghi', 'Gohir.D11G047800' => 'ghi', 'Gohir.D11G193300' => 'ghi', 'Gohir.D13G047000' => 'ghi', 'Gorai.002G089600' => 'gra', 'Gorai.002G201300' => 'gra', 'Gorai.002G251300' => 'gra', 'Gorai.002G251400' => 'gra', 'Gorai.005G054800' => 'gra', 'Gorai.005G120800' => 'gra', 'Gorai.007G051300' => 'gra', 'Gorai.007G206700' => 'gra', 'Gorai.009G440100' => 'gra', 'Gorai.011G102700' => 'gra', 'Gorai.011G102800' => 'gra', 'Gorai.011G103000' => 'gra', 'Gorai.011G133100' => 'gra', 'Gorai.012G146500' => 'gra', 'Gorai.013G052700' => 'gra', 'GSVIVG01009654001' => 'vvi', 'GSVIVG01017730001' => 'vvi', 'GSVIVG01019024001' => 'vvi', 'GSVIVG01019025001' => 'vvi', 'GSVIVG01031917001' => 'vvi', 'HanXRQChr03g0075101' => 'han', 'HanXRQChr03g0076451' => 'han', 'HanXRQChr05g0130651' => 'han', 'HanXRQChr05g0134001' => 'han', 'HanXRQChr05g0155721' => 'han', 'HanXRQChr06g0170541' => 'han', 'HanXRQChr08g0211581' => 'han', 'HanXRQChr08g0211611' => 'han', 'HanXRQChr10g0297371' => 'han', 'HanXRQChr12g0377161' => 'han', 'HanXRQChr14g0429141' => 'han', 'HanXRQChr15g0487501' => 'han', 'Haze_02082' => 'cav', 'Haze_02415' => 'cav', 'Haze_06217' => 'cav', 'Haze_09686' => 'cav', 'Haze_14250' => 'cav', 'Haze_14253' => 'cav', 'Haze_15135' => 'cav', 'Haze_23957' => 'cav', 'Hma1.2p1_0032F.1_g019050' => 'hma', 'Hma1.2p1_0032F.1_g019060' => 'hma', 'Hma1.2p1_0032F.1_g019070' => 'hma', 'Hma1.2p1_0066F.1_g036710' => 'hma', 'Hma1.2p1_0158F.1_g070270' => 'hma', 'Hma1.2p1_0158F.1_g070280' => 'hma', 'Hma1.2p1_0163F.1_g072840' => 'hma', 'Hma1.2p1_0203F.1_g086670' => 'hma', 'Hma1.2p1_0524F.1_g172330' => 'hma', 'Hma1.2p1_0738F.1_g211090' => 'hma', 'Hma1.2p1_0829F.1_g225220' => 'hma', 'Hma1.2p1_1840F.1_g304920' => 'hma', 'Hma1.2p1_2518F.1_g323780' => 'hma', 'HPP92_007316' => 'vpl', 'HPP92_010187' => 'vpl', 'HPP92_010239' => 'vpl', 'HPP92_010240' => 'vpl', 'HPP92_020400' => 'vpl', 'HPP92_022424' => 'vpl', 'HPP92_027021' => 'vpl', 'HPP92_027029' => 'vpl', 'Hund00007' => 'sun', 'Hund06221' => 'sun', 'Hund14135' => 'sun', 'Lalb_Chr01g0002691' => 'lal', 'Lalb_Chr03g0025801' => 'lal', 'Lalb_Chr05g0227701' => 'lal', 'Lalb_Chr07g0187861' => 'lal', 'Lalb_Chr09g0333631' => 'lal', 'Lalb_Chr16g0377961' => 'lal', 'Lj1A1118T27' => 'lonja', 'Lj1A1121T27' => 'lonja', 'Lj2A447T56' => 'lonja', 'Lj2C447T14' => 'lonja', 'Lj2g0025412' => 'lja', 'Lj3g0026150' => 'lja', 'Lj4C195G12' => 'lonja', 'Lj4C43T5' => 'lonja', 'Lj4g0010056' => 'lja', 'Lj4g0027858' => 'lja', 'Lj4P264T19' => 'lonja', 'Lj5A175G91' => 'lonja', 'Lj5C200G5' => 'lonja', 'Lj7A581T54' => 'lonja', 'Lj9A402G70' => 'lonja', 'LjContig00272g0020962' => 'lja', 'Lsat_1_v5_gn_3_65220' => 'lsa', 'Lsat_1_v5_gn_3_79400' => 'lsa', 'Lsat_1_v5_gn_4_144441' => 'lsa', 'Lsat_1_v5_gn_5_30040' => 'lsa', 'Lsat_1_v5_gn_7_48281' => 'lsa', 'Lsat_1_v5_gn_9_93420' => 'lsa', 'Lsat_1_v5_gn_9_93760' => 'lsa', 'Manes.01G117500' => 'mes', 'Manes.02G076100' => 'mes', 'Manes.03G130300' => 'mes', 'Manes.11G098400' => 'mes', 'Manes.12G098300' => 'mes', 'Manes.12G098600' => 'mes', 'Manes.13G136200' => 'mes', 'Manes.15G071000' => 'mes', 'Manes.15G148600' => 'mes', 'Mapoly0026s0044' => 'mpo', 'Mapoly0058s0102' => 'mpo', 'Mapoly0103s0006' => 'mpo', 'MBI08_g42767_MAGBIO' => 'mbi', 'MBI16_g06250_MAGBIO' => 'mbi', 'MBI16_g28875_MAGBIO' => 'mbi', 'MBI16_g42558_MAGBIO' => 'mbi', 'MBI16_g47898_MAGBIO' => 'mbi', 'MBI18_g06568_MAGBIO' => 'mbi', 'MBI18_g18573_MAGBIO' => 'mbi', 'MCO15G463' => 'mco', 'MD02G1154400' => 'mdo', 'MD05G1070400' => 'mdo', 'MD05G1127100' => 'mdo', 'MD09G1264500' => 'mdo', 'MD10G1081300' => 'mdo', 'MD12G1035200' => 'mdo', 'MD12G1092700' => 'mdo', 'MD15G1269000' => 'mdo', 'MD15G1269100' => 'mdo', 'MD17G1260500' => 'mdo', 'Medtr4g069240' => 'mtr', 'Medtr5g019460' => 'mtr', 'Medtr5g092910' => 'mtr', 'Medtr8g078070' => 'mtr', 'MELO3C007490.2' => 'cme', 'MELO3C013157.2' => 'cme', 'MELO3C013320.2' => 'cme', 'MELO3C020952.2' => 'cme', 'MELO3C021946.2' => 'cme', 'Migut.C00684' => 'egut', 'Migut.H00194' => 'egut', 'Migut.H00196' => 'egut', 'Migut.H00197' => 'egut', 'Migut.K00895' => 'egut', 'Migut.M01751' => 'egut', 'Migut.N01338' => 'egut', 'MSTRG.1301' => 'ama', 'MSTRG.15285' => 'ama', 'MSTRG.16792' => 'ama', 'MSTRG.19964' => 'ama', 'MSTRG.23557' => 'ama', 'MSTRG.23558' => 'ama', 'MSTRG.25143' => 'ama', 'MSTRG.27627' => 'ama', 'Nitab4.5_0000110g0240' => 'nta', 'Nitab4.5_0000199g0010' => 'nta', 'Nitab4.5_0000336g0150' => 'nta', 'Nitab4.5_0001794g0020' => 'nta', 'Nitab4.5_0001922g0120' => 'nta', 'Nitab4.5_0003495g0010' => 'nta', 'Nitab4.5_0004118g0140' => 'nta', 'Nitab4.5_0004294g0030' => 'nta', 'Nitab4.5_0005314g0040' => 'nta', 'Nitab4.5_0006685g0020' => 'nta', 'Nitab4.5_0007287g0020' => 'nta', 'Nitab4.5_0008989g0040' => 'nta', 'Nitab4.5_0011545g0020' => 'nta', 'Nitab4.5_0022318g0010' => 'nta', 'Nn1g01323' => 'nnu', 'Nn1g03506' => 'nnu', 'Nn1g07470' => 'nnu', 'Nn1g09262' => 'nnu', 'Nn2g11718' => 'nnu', 'Nn3g18287' => 'nnu', 'Nn3g21514' => 'nnu', 'Nn4g25865' => 'nnu', 'Nn5g28838' => 'nnu', 'Nn5g29504' => 'nnu', 'Nn5g29507' => 'nnu', 'Nn5g30868' => 'nnu', 'Oeu025452.1' => 'oeu', 'Oeu028954.1' => 'oeu', 'Oeu029747.1' => 'oeu', 'Oeu030751.1' => 'oeu', 'Oeu032256.1' => 'oeu', 'Oeu032560.1' => 'oeu', 'Oeu032561.1' => 'oeu', 'Oeu035116.1' => 'oeu', 'Oeu035118.1' => 'oeu', 'Oeu035119.1' => 'oeu', 'Oeu041816.1' => 'oeu', 'Oeu045086.1' => 'oeu', 'Oeu062567.1' => 'oeu', 'Oeu062587.1' => 'oeu', 'Os01g0248701' => 'osa', 'Os02g0668100' => 'osa', 'Os05g0235701' => 'osa', 'Os07g0580900' => 'osa', 'Peaxi162Scf00016g00944' => 'pax', 'Peaxi162Scf00057g00074' => 'pax', 'Peaxi162Scf00113g00317' => 'pax', 'Peaxi162Scf00235g00326' => 'pax', 'Peaxi162Scf00235g00327' => 'pax', 'Peaxi162Scf00305g00121' => 'pax', 'Peaxi162Scf00684g00567' => 'pax', 'Peaxi162Scf01327g00020' => 'pax', 'PGR042G1234' => 'pgr', 'PGR042G1683' => 'pgr', 'PGR083G1771' => 'pgr', 'PGR102G1187' => 'pgr', 'PGR102G1645' => 'pgr', 'PGR102G2079' => 'pgr', 'PGR102G2668' => 'pgr', 'PGR102G3384' => 'pgr', 'PGSC0003DMG400002687' => 'stu', 'PGSC0003DMG400015673' => 'stu', 'PGSC0003DMG400022214' => 'stu', 'PGSC0003DMG400027856' => 'stu', 'PGSC0003DMG400041508' => 'stu', 'PGSC0003DMG400043267' => 'stu', 'PGSC0003DMG400047044' => 'stu', 'Phvul.001G139700' => 'pvu', 'Phvul.002G026400' => 'pvu', 'Phvul.002G181400' => 'pvu', 'Phvul.003G251500' => 'pvu', 'Phvul.008G268100' => 'pvu', 'Phvul.008G268200' => 'pvu', 'Phvul.011G047300' => 'pvu', 'Potri.004G090600' => 'ptr', 'Potri.004G151050' => 'ptr', 'Potri.004G157900' => 'ptr', 'Potri.004G179628' => 'ptr', 'Potri.005G127000' => 'ptr', 'Potri.005G127100' => 'ptr', 'Potri.007G031000' => 'ptr', 'Potri.007G031100' => 'ptr', 'Potri.009G112922' => 'ptr', 'Potri.009G139600' => 'ptr', 'Potri.015G043400' => 'ptr', 'Potri.017G124600' => 'ptr', 'Potri.017G124700' => 'ptr', 'Potri.T125804' => 'ptr', 'Pp3c18_14700' => 'ppa', 'Pp3c21_14800' => 'ppa', 'Pp3c24_6930' => 'ppa', 'PRCOL_00004623' => 'pco', 'Prupe.3G162100' => 'ppe', 'Prupe.4G215000' => 'ppe', 'Prupe.7G148600' => 'ppe', 'Prupe.7G148700' => 'ppe', 'Prupe.8G102600' => 'ppe', 'Prupe.8G170800' => 'ppe', 'Psat2g011760' => 'psa', 'Psat2g162240' => 'psa', 'Psat4g091240' => 'psa', 'Psat7g084240' => 'psa', 'Psat7g141000' => 'psa', 'PSO017G7142' => 'pso', 'PSO170G4861' => 'pso', 'PSO210G7766' => 'pso', 'PSO384G1480' => 'pso', 'PSO478G2790' => 'pso', 'PSO541G1568' => 'pso', 'PSO541G5997' => 'pso', 'PSO675G2316' => 'pso', 'PSO675G2926' => 'pso', 'QL01p035741' => 'qlo', 'QL02p057890' => 'qlo', 'QL06p044966' => 'qlo', 'QL07p030499' => 'qlo', 'QL08p009862' => 'qlo', 'QL08p009924' => 'qlo', 'QL08p025723' => 'qlo', 'QL08p042963' => 'qlo', 'QL09p020578' => 'qlo', 'QL11p002471' => 'qlo', 'QL11p042537' => 'qlo', 'QL11p042736' => 'qlo', 'QL11p052645' => 'qlo', 'QL11p052647' => 'qlo', 'RcHm_v2.0_Chr1g0353891' => 'rch', 'RcHm_v2.0_Chr1g0374001' => 'rch', 'RcHm_v2.0_Chr1g0382941' => 'rch', 'RcHm_v2.0_Chr2g0102671' => 'rch', 'RcHm_v2.0_Chr2g0173741' => 'rch', 'RcHm_v2.0_Chr3g0466051' => 'rch', 'RcHm_v2.0_Chr3g0493061' => 'rch', 'RcHm_v2.0_Chr5g0013331' => 'rch', 'RcHm_v2.0_Chr5g0023661' => 'rch', 'RcHm_v2.0_Chr5g0045111' => 'rch', 'RcHm_v2.0_Chr5g0045401' => 'rch', 'RcHm_v2.0_Chr5g0069311' => 'rch', 'RcHm_v2.0_Chr6g0262991' => 'rch', 'RcHm_v2.0_Chr6g0279181' => 'rch', 'RcHm_v2.0_Chr6g0294741' => 'rch', 'RcHm_v2.0_Chr7g0227191' => 'rch', 'Rhsim06G0036100' => 'rsi', 'Rhsim06G0218000' => 'rsi', 'Rhsim06G0239100' => 'rsi', 'Rhsim10G0176700' => 'rsi', 'Rhsim11G0194700' => 'rsi', 'RhsimUnG0249600' => 'rsi', 'Sabra04G0060900' => 'sbr', 'Sabra05G0104100' => 'sbr', 'Sabra07G0026800' => 'sbr', 'Sabra07G0026900' => 'sbr', 'Sabra09G0108100' => 'sbr', 'Sabra15G0041800' => 'sbr', 'SalBow1G3542' => 'sbo', 'SalBow1G3734' => 'sbo', 'SalBow1G4563' => 'sbo', 'SalBow1G6479' => 'sbo', 'SalBow2G3153' => 'sbo', 'SalBow5G0677' => 'sbo', 'SalBow5G2866' => 'sbo', 'SalBow5G3169' => 'sbo', 'SalBow5G3822' => 'sbo', 'SalBow5G4393' => 'sbo', 'SalBow5G4542' => 'sbo', 'SalBow5G5296' => 'sbo', 'SalBow6G1846' => 'sbo', 'SalBow6G3366' => 'sbo', 'SalBow6G3838' => 'sbo', 'SalBow7G3909' => 'sbo', 'SalBow7G4281' => 'sbo', 'SalBow8G0047' => 'sbo', 'SalBow8G1437' => 'sbo', 'SalBow8G3205' => 'sbo', 'Sc03g0000950' => 'sci', 'Sc07g0002800' => 'sci', 'Sc14g0002350' => 'sci', 'Sc18g0004660' => 'sci', 'Sed0003608' => 'sed', 'Sed0005165' => 'sed', 'Sed0006655' => 'sed', 'Sed0010851' => 'sed', 'Sed0013163' => 'sed', 'Sed0016826' => 'sed', 'Sed0020293' => 'sed', 'Sed0021949' => 'sed', 'Sed0025521' => 'sed', 'SEGI_00102' => 'sgi', 'SEGI_02638' => 'sgi', 'SEGI_04451' => 'sgi', 'SEGI_08447' => 'sgi', 'SEGI_10091' => 'sgi', 'SEGI_20093' => 'sgi', 'SEGI_22809' => 'sgi', 'SEGI_25882' => 'sgi', 'SEGI_31681' => 'sgi', 'SEGI_36266' => 'sgi', 'SEGI_39401' => 'sgi', 'SEGI_40560' => 'sgi', 'SGA_v2.0_scaffold146G36209' => 'sas', 'SGA_v2.0_scaffold276G46656' => 'sas', 'SGA_v2.0_scaffold276G46660' => 'sas', 'SGA_v2.0_scaffold31G12912' => 'sas', 'SGA_v2.0_scaffold33G13424' => 'sas', 'SGA_v2.0_scaffold33G13512' => 'sas', 'SGA_v2.0_scaffold36G14388' => 'sas', 'SGA_v2.0_scaffold48G18042' => 'sas', 'SGA_v2.0_scaffold58G20567' => 'sas', 'SGA_v2.0_scaffold62G21334' => 'sas', 'SGA_v2.0_scaffold77G25356' => 'sas', 'SGA_v2.0_scaffold80G25832' => 'sas', 'SHI08684' => 'shi', 'SMO014G0001' => 'smo', 'SMO118G0552' => 'smo', 'SMO119G0410' => 'smo', 'SMO238G0007' => 'smo', 'SMO304G0140' => 'smo', 'SMO358G0537' => 'smo', 'Solyc01g109410.4' => 'sly', 'Solyc02g085700.1' => 'sly', 'Solyc02g085710.4' => 'sly', 'Solyc02g085720.1' => 'sly', 'Solyc04g079960.1' => 'sly', 'Solyc07g064660.1' => 'sly', 'Solyc09g008920.3' => 'sly', 'Solyc11g011240.1' => 'sly', 'Sopen01g051600' => 'spe', 'Sopen02g030390' => 'spe', 'Sopen02g030400' => 'spe', 'Sopen02g030410' => 'spe', 'Sopen04g033540' => 'spe', 'Sopen07g032860' => 'spe', 'Sopen09g003690' => 'spe', 'Sopen11g006020' => 'spe', 'Sp1g36400' => 'spa', 'Sp2g30020' => 'spa', 'Sp3g12820' => 'spa', 'Sp3g18170' => 'spa', 'Sp3g18180' => 'spa', 'Sp3g18190' => 'spa', 'Sp3g32110' => 'spa', 'Sp4g02740' => 'spa', 'Sp7g34470' => 'spa', 'Sp7g37320' => 'spa', 'TAR374G1630' => 'tar', 'TAR376G0372' => 'tar', 'TAR381G0908' => 'tar', 'TAR625G0447' => 'tar', 'TAR625G0871' => 'tar', 'TAR625G1020' => 'tar', 'TAR627G0120' => 'tar', 'TAR628G0085' => 'tar', 'TAR629G2364' => 'tar', 'THA.LOC104804224' => 'tha', 'THA.LOC104804225' => 'tha', 'THA.LOC104807556' => 'tha', 'THA.LOC104818103' => 'tha', 'THA.LOC104819216' => 'tha', 'THA.LOC104819809' => 'tha', 'THA.LOC104822600' => 'tha', 'THA.LOC104826869' => 'tha', 'Thecc.01G041600' => 'tca', 'Thecc.01G041700' => 'tca', 'Thecc.02G053000' => 'tca', 'Thecc.02G122300' => 'tca', 'Thecc.04G116800' => 'tca', 'Thecc.04G116900' => 'tca', 'Thecc.04G117100' => 'tca', 'Thecc.07G034900' => 'tca', 'Thecc.08G195700' => 'tca', 'Thhalv10000201m.g' => 'esa', 'Thhalv10004242m.g' => 'esa', 'Thhalv10021022m.g' => 'esa', 'Thhalv10022044m.g' => 'esa', 'Thhalv10022207m.g' => 'esa', 'Thhalv10022318m.g' => 'esa', 'Thhalv10022745m.g' => 'esa', 'Thhalv10022750m.g' => 'esa', 'Thhalv10025481m.g' => 'esa', 'Thhalv10025662m.g' => 'esa', 'TPR.G1191' => 'tpr', 'TPR.G1233' => 'tpr', 'TPR.G20285' => 'tpr', 'TPR.G23215' => 'tpr', 'TPR.G28529' => 'tpr', 'TPR.G29546' => 'tpr', 'TPR.G5105' => 'tpr', 'TWI09G0304' => 'twi', 'TWI09G1554' => 'twi', 'TWI14G0322' => 'twi', 'TWI14G0612' => 'twi', 'TWI14G0984' => 'twi', 'TWI15G0235' => 'twi', 'TWI18G1050' => 'twi', 'TWI23G0024' => 'twi', 'TWI31G0747' => 'twi', 'TWI38G0148' => 'twi', 'TWI53G0023' => 'twi', 'TWI53G0840' => 'twi', 'TWI53G0922' => 'twi', 'TWI53G0930' => 'twi', 'TWI53G1202' => 'twi', 'TWI53G1264' => 'twi', 'TWI59G1323' => 'twi', 'TWI73G0480' => 'twi', 'TWI73G0750' => 'twi', 'TWI75G0228' => 'twi', 'TWI77G0010' => 'twi', 'TWI79G0179' => 'twi', 'TWI79G0610' => 'twi', 'unitig_0.g746' => 'ugi', 'unitig_21.g20009' => 'ugi', 'unitig_37.g12815' => 'ugi', 'unitig_46.g18164' => 'ugi', 'unitig_52.g17591' => 'ugi', 'unitig_578.g16753' => 'ugi', 'unitig_748.g8756' => 'ugi', 'unitig_85.g27232' => 'ugi', 'vmacro02136' => 'vma', 'vmacro02300' => 'vma', 'vmacro21614' => 'vma', 'vmacro21615' => 'vma', 'vmacro23069' => 'vma', 'vmacro23070' => 'vma', 'VMungo0251G0250' => 'vmu', 'VMungo0251G1652' => 'vmu', 'VMungo0647G1662' => 'vmu', 'VMungo1127G0953' => 'vmu', 'VMungo1215G0277' => 'vmu', 'VMungo1383G1687' => 'vmu', 'Zm00001eb095330' => 'zma', 'Zm00001eb107690' => 'zma', 'Zm00001eb186980' => 'zma', 'Zm00001eb250080' => 'zma', 'Zm00001eb303200' => 'zma', 'Zm00001eb325560' => 'zma', 'Zm00001eb333900' => 'zma' ) $gf_id = 'HOM05D000626' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000626' ) $data_identifier = 'HOM05D000626' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 11, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 15, 'bra' => (int) 18, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 13, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 6, 'lonja' => (int) 11, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 12, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 14, 'rch' => (int) 16, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 20, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 12, 'sas' => (int) 12, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 10, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 23, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb333900' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1